Here is a list of all files with brief descriptions:

[detail level 123456]

cpp
src
analysis
statistics.hpp
configuration
ConfigurationWriter.cpp
ConfigurationWriter.h
Connection.cpp
Connection.h
EventLogger.cpp
EventLogger.h
ImNode.cpp
ImNode.h
NodeBuilder.cpp
NodeBuilder.h
WarpTwinPyConfigWriter.cpp
WarpTwinPyConfigWriter.h
cr3bputils
conversions.cpp
conversions.h
CR3BPDynamics.cpp
CR3BPDynamics.h
events
LogEvent.cpp
LogEvent.h
SimTerminationEvent.cpp
SimTerminationEvent.h
frames
Body.cpp
Body.h
Frame.cpp
Frame.h
FrameDynamics.cpp
FrameDynamics.h
frameutils.cpp
frameutils.h
Joint.cpp
Joint.h
Node.cpp
Node.h
licensing
encryptionfunctions.cpp
encryptionfunctions.h
simlicense.cpp
simlicense.h
logging
CsvLogger.cpp
CsvLogger.h
Hdf5Logger.cpp
Hdf5Logger.h
LogManager.cpp
LogManager.h
models
actuators
CR3BPDynamicsModel.cpp
CR3BPDynamicsModel.h
FlatPlateDragModel.cpp
FlatPlateDragModel.h
ImpulseModel.cpp
ImpulseModel.h
ReactionWheelModel.cpp
ReactionWheelModel.h
Servo.cpp
Servo.h
SimpleThrusterModel.cpp
SimpleThrusterModel.h
TimedImpulsiveBurnModel.cpp
TimedImpulsiveBurnModel.h
TorqueCoilModel.cpp
TorqueCoilModel.h
assemblies
CustomPlanet.cpp
CustomPlanet.h
Spacecraft.cpp
Spacecraft.h
SpicePlanet.cpp
SpicePlanet.h
communications
RadioModel.cpp
RadioModel.h
SimpleComAnalysisModel.cpp
SimpleComAnalysisModel.h
environment
AsphericalGravityModel.cpp
AsphericalGravityModel.h
CompositeWindModel.cpp
CompositeWindModel.h
DipoleMagneticFieldModel.cpp
DipoleMagneticFieldModel.h
GravityGradientModel.cpp
GravityGradientModel.h
MSISAtmosphereModel.cpp
MSISAtmosphereModel.h
OccultationModel.cpp
OccultationModel.h
PointMassGravityModel.cpp
PointMassGravityModel.h
SimpleDisturbanceWindModel.cpp
SimpleDisturbanceWindModel.h
SimpleMeanWindModel.cpp
SimpleMeanWindModel.h
SolarRadiationPressureModel.cpp
SolarRadiationPressureModel.h
SphericalHarmonicsGravityModel.cpp
SphericalHarmonicsGravityModel.h
TabularAtmosphereModel.cpp
TabularAtmosphereModel.h
WorldMagneticFieldModel.cpp
WorldMagneticFieldModel.h
power
PowerLoad.cpp
PowerLoad.h
SimpleBatterySystem.cpp
SimpleBatterySystem.h
SolarPanelModel.cpp
SolarPanelModel.h
SolarPanelPowerModel.cpp
SolarPanelPowerModel.h
sensors
Accelerometer.cpp
Accelerometer.h
EarthObservationModel.cpp
EarthObservationModel.h
GPS.cpp
GPS.h
GroundStationSensor.cpp
GroundStationSensor.h
Gyroscope.cpp
Gyroscope.h
IMU.cpp
IMU.h
Magnetometer.cpp
Magnetometer.h
PressureSensor.cpp
PressureSensor.h
SimpleCamera.cpp
SimpleCamera.h
StarTracker.cpp
StarTracker.h
SunSensor.cpp
SunSensor.h
states
AerodynamicsStateModel.cpp
AerodynamicsStateModel.h
FrameStateSensorModel.cpp
FrameStateSensorModel.h
GroundStationModel.cpp
GroundStationModel.h
LlaDeticStateInit.cpp
LlaDeticStateInit.h
LvcStateSensorModel.cpp
LvcStateSensorModel.h
OrbitalElementsSensorModel.cpp
OrbitalElementsSensorModel.h
OrbitalElementsStateInit.cpp
OrbitalElementsStateInit.h
PlanetRelativeStatesModel.cpp
PlanetRelativeStatesModel.h
RangeAzElSensorModel.cpp
RangeAzElSensorModel.h
SpacecraftLinkModel.cpp
SpacecraftLinkModel.h
support
BiasNoiseModel.cpp
BiasNoiseModel.h
DirectionalAdaptiveGuidance.cpp
DirectionalAdaptiveGuidance.h
EffectiveSolarAreaModel.cpp
EffectiveSolarAreaModel.h
ExternalInterfaceModel.cpp
ExternalInterfaceModel.h
LvlhFrameManagerModel.cpp
LvlhFrameManagerModel.h
MarkovUncertaintyModel.cpp
MarkovUncertaintyModel.h
PidTranslationalControl.cpp
PidTranslationalControl.h
SimTableScheduleModel.cpp
SimTableScheduleModel.h
SixDOFDynamicsModel.cpp
SixDOFDynamicsModel.h
TabularThrustModel.cpp
TabularThrustModel.h
monitors
ProximityMonitor.cpp
ProximityMonitor.h
RateMonitor.cpp
RateMonitor.h
TimeTriggerMonitor.cpp
TimeTriggerMonitor.h
msis
nrlmsise-00.cpp
nrlmsise-00.h
nrlmsise-00_data.cpp
simulation
ArgParser.cpp
ArgParser.h
DispersionEngine.cpp
DispersionEngine.h
Model.cpp
Model.h
NormalRandom.hpp
SimScheduler.cpp
SimScheduler.h
SimTimeManager.cpp
SimTimeManager.h
SimulationExecutive.cpp
SimulationExecutive.h
SimulationSteps.h
stateinit.cpp
stateinit.h
UniformRandom.hpp
VisualsModel.cpp
VisualsModel.h
utils
AutoDoc.cpp
AutoDoc.h
DataIOShmemRelay.cpp
DataIOShmemRelay.h
DataIOSocketRelay.cpp
DataIOSocketRelay.h
debugutils.hpp
fileutils.cpp
fileutils.h
functionutils.hpp
googleearthkml.cpp
googleearthkml.h
Interpolate2D.cpp
Interpolate2D.h
InterpolateBilinear.cpp
InterpolateBilinear.h
InterpolateTrilinear.cpp
InterpolateTrilinear.h
kepler.cpp
kepler.h
LatencyUtil.hpp
magneticFieldUtils.hpp
orbitutils.cpp
orbitutils.h
planetrelutils.cpp
planetrelutils.h
SimulationUtils.cpp
SimulationUtils.h
sphericalharmonicsutils.cpp
sphericalharmonicsutils.h
spiceutils.cpp
spiceutils.h
stdstringutils.cpp
stdstringutils.hpp
ModelSpace.h
docs
warpos
clockwerk
src
architecture
CircularBuffer.hpp
DataIO.hpp
DataIOBase.cpp
DataIOBase.h
GraphTreeObject.cpp
GraphTreeObject.h
Queue.hpp
signalutils.cpp
signalutils.h
Time.cpp
Time.h
core
CartesianVector.hpp
clockwerkerrors.h
half.hpp
mathmacros.h
Matrix.hpp
matrixmath.hpp
safemath.cpp
safemath.h
vectormath.cpp
vectormath.hpp
dynamics
attitudemath.cpp
attitudemath.h
DCM.cpp
DCM.h
Euler321.cpp
Euler321.h
MRP.cpp
MRP.h
Quaternion.cpp
Quaternion.h
logging
JsonCdl.hpp
SimLogger.cpp
SimLogger.h
utils
Interpolator.cpp
Interpolator.h
json.cpp
json.h
PersistenceTracker.hpp
stringutils.cpp
stringutils.hpp
src
apps
gnc
InertialNavigationEKF
DeadReckon.cpp
DeadReckon.h
GPSUpdate.cpp
GPSUpdate.h
InertialNavigationDefinition.hpp
MagUpdate.cpp
MagUpdate.h
PdAttitudeControl.cpp
PdAttitudeControl.h
TwoAxisPointingGuidance.cpp
TwoAxisPointingGuidance.h
app_apids.h
LedBlinker.cpp
LedBlinker.h
command
cmd_CommandManager.h
cmd_InertialNavigationBiasMeasurementUpdate.h
cmd_InertialNavigationDeadReckon.h
cmd_InertialNavigationGPSMeasurementUpdate.h
cmd_InertialNavigationMagnetometerMeasurementUpdate.h
cmd_LedBlinker.h
cmd_PdAttitudeControl.h
cmd_StorageManager.h
cmd_TelemetryManager.h
communication
spacepacketutils.cpp
spacepacketutils.hpp
constants
mathconstants.h
planetdefaults.cpp
planetdefaults.h
unitutils.h
flight
App.cpp
App.h
appmacros.h
Command.h
CommandManager.cpp
CommandManager.h
flighterrors.h
FlightExecutive.cpp
FlightExecutive.h
OS.h
Platform.h
Scheduler.cpp
Scheduler.h
Setup.h
StorageManager.cpp
StorageManager.h
Telemetry.h	Header for generic telemetry packet struct generation and serialization
TelemetryManager.cpp
TelemetryManager.h
gncutils
dynamics
dynamicsFunctions.cpp
dynamicsFunctions.h
Rates.hpp
EKF
KFCore
kalman_takasu.cpp
kalman_takasu.h	Kalman Filter Implementation (Takasu Formulation)
kalman_udu.cpp
kalman_udu.h	UDU Kalman Filter (Bierman/Thornton "Square Root" Implementation)
linalg.cpp
linalg.h	Embedded linear algebra math library
miniblas.cpp
miniblas.h	Minimal generic BLAS implementation
EkfDynamics.hpp
EkfMeasurementUpdate.hpp
EkfTimeUpdate.hpp
GPSMeasurements.hpp
InertialNavigationDynamics.cpp
InertialNavigationDynamics.h
Measurements.hpp
NonlinearLeastSquares.hpp
PointingVectorMeasurements.hpp
integrator
ForwardEulerIntegrator.hpp
Integrator.hpp
RK4Integrator.hpp
states
aeroutils.cpp
aeroutils.h
planetrelutils.cpp
planetrelutils.h
schedules
TableScheduler.hpp
telemetry
tlm_CommandManager.h
tlm_Executive.h
tlm_InertialNavigationBiasMeasurementUpdate.h
tlm_InertialNavigationDeadReckon.h
tlm_InertialNavigationGPSMeasurementUpdate.h
tlm_InertialNavigationMagnetometerMeasurementUpdate.h
tlm_LedBlinker.h
tlm_PdAttitudeControl.h
tlm_TelemetryManager.h
tlm_TwoAxisPointingGuidance.h